Population Genetic Analysis of Phytophthora parasitica From Tobacco in Chongqing, Southwestern China.
Identifieur interne : 000414 ( Main/Exploration ); précédent : 000413; suivant : 000415Population Genetic Analysis of Phytophthora parasitica From Tobacco in Chongqing, Southwestern China.
Auteurs : Qiang Zhang [République populaire de Chine] ; Ruirui Feng [République populaire de Chine] ; Qing Zheng [République populaire de Chine] ; Jinyang Li [République populaire de Chine] ; Zhirou Liu [République populaire de Chine] ; Dan Zhao [République populaire de Chine] ; Yuling Meng [République populaire de Chine] ; Yuee Tian [République populaire de Chine] ; Weiwei Li [République populaire de Chine] ; Xiaowei Ma [République populaire de Chine] ; Shuang Wang [République populaire de Chine] ; Weixing Shan [République populaire de Chine]Source :
- Plant disease [ 0191-2917 ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- analogues et dérivés : Alanine.
- effets des médicaments et des substances chimiques : Phytophthora.
- génétique : Phytophthora, Répétitions microsatellites.
- parasitologie : Tabac.
- pharmacologie : Alanine.
- Chine, Génotype, Génétique des populations.
- Wicri :
- geographic : République populaire de Chine.
English descriptors
- KwdEn :
- MESH :
- chemical , analogs & derivatives : Alanine.
- chemical , pharmacology : Alanine.
- geographic : China.
- drug effects : Phytophthora.
- genetics : Microsatellite Repeats, Phytophthora.
- parasitology : Tobacco.
- Genetics, Population, Genotype.
Abstract
Tobacco black shank, caused by Phytophthora parasitica, is one of the most notorious tobacco diseases and causes huge economic losses worldwide. Understanding the genetic variation of P. parasitica populations is essential to the development of disease control measures. In this research, 210 simple sequence repeat (SSR) markers for P. parasitica were identified, 10 of which were polymorphic among nine reference strains. We further performed population genetic analysis of 245 P. parasitica isolates randomly collected from tobacco fields in Chongqing for mating type, molecular variation at 14 SSR loci (four of which were identified previously), and sensitivity to the fungicide metalaxyl. The results showed that the A2 mating type was dominant and no A1 mating type isolate was discovered. SSR genotyping distinguished 245 P. parasitica isolates into 46 genotypes, four of which were dominant in the population. Low genotypic diversity and excess heterozygosity were common in nearly all of the populations from Chongqing. Population analysis showed that no differentiation existed among different populations. All isolates tested were highly sensitive to metalaxyl. Taken together, our results showed that the P. parasitica populations from tobacco fields in Chongqing belonged to a clonal lineage and were highly sensitive to metalaxyl.
DOI: 10.1094/PDIS-05-18-0879-RE
PubMed: 31339441
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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712100</wicri:noRegion></affiliation></author><author><name sortKey="Tian, Yuee" sort="Tian, Yuee" uniqKey="Tian Y" first="Yuee" last="Tian">Yuee Tian</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Li, Weiwei" sort="Li, Weiwei" uniqKey="Li W" first="Weiwei" last="Li">Weiwei Li</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Ma, Xiaowei" sort="Ma, Xiaowei" uniqKey="Ma X" first="Xiaowei" last="Ma">Xiaowei Ma</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Shuang" sort="Wang, Shuang" uniqKey="Wang S" first="Shuang" last="Wang">Shuang Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Shan, Weixing" sort="Shan, Weixing" uniqKey="Shan W" first="Weixing" last="Shan">Weixing Shan</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:31339441</idno><idno type="pmid">31339441</idno><idno type="doi">10.1094/PDIS-05-18-0879-RE</idno><idno type="wicri:Area/Main/Corpus">000424</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000424</idno><idno type="wicri:Area/Main/Curation">000424</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000424</idno><idno type="wicri:Area/Main/Exploration">000424</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Population Genetic Analysis of <i>Phytophthora parasitica</i> From Tobacco in Chongqing, Southwestern China.</title><author><name sortKey="Zhang, Qiang" sort="Zhang, Qiang" uniqKey="Zhang Q" first="Qiang" last="Zhang">Qiang Zhang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Feng, Ruirui" sort="Feng, Ruirui" uniqKey="Feng R" first="Ruirui" last="Feng">Ruirui Feng</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Zheng, Qing" sort="Zheng, Qing" uniqKey="Zheng Q" first="Qing" last="Zheng">Qing Zheng</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Li, Jinyang" sort="Li, Jinyang" uniqKey="Li J" first="Jinyang" last="Li">Jinyang Li</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Zhirou" sort="Liu, Zhirou" uniqKey="Liu Z" first="Zhirou" last="Liu">Zhirou Liu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Zhao, Dan" sort="Zhao, Dan" uniqKey="Zhao D" first="Dan" last="Zhao">Dan Zhao</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Meng, Yuling" sort="Meng, Yuling" uniqKey="Meng Y" first="Yuling" last="Meng">Yuling Meng</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Tian, Yuee" sort="Tian, Yuee" uniqKey="Tian Y" first="Yuee" last="Tian">Yuee Tian</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Li, Weiwei" sort="Li, Weiwei" uniqKey="Li W" first="Weiwei" last="Li">Weiwei Li</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Ma, Xiaowei" sort="Ma, Xiaowei" uniqKey="Ma X" first="Xiaowei" last="Ma">Xiaowei Ma</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Shuang" sort="Wang, Shuang" uniqKey="Wang S" first="Shuang" last="Wang">Shuang Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author><author><name sortKey="Shan, Weixing" sort="Shan, Weixing" uniqKey="Shan W" first="Weixing" last="Shan">Weixing Shan</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100</wicri:regionArea><wicri:noRegion>Shaanxi 712100</wicri:noRegion></affiliation></author></analytic><series><title level="j">Plant disease</title><idno type="ISSN">0191-2917</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alanine (analogs & derivatives)</term><term>Alanine (pharmacology)</term><term>China (MeSH)</term><term>Genetics, Population (MeSH)</term><term>Genotype (MeSH)</term><term>Microsatellite Repeats (genetics)</term><term>Phytophthora (drug effects)</term><term>Phytophthora (genetics)</term><term>Tobacco (parasitology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Alanine (analogues et dérivés)</term><term>Alanine (pharmacologie)</term><term>Chine (MeSH)</term><term>Génotype (MeSH)</term><term>Génétique des populations (MeSH)</term><term>Phytophthora (effets des médicaments et des substances chimiques)</term><term>Phytophthora (génétique)</term><term>Répétitions microsatellites (génétique)</term><term>Tabac (parasitologie)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analogs & derivatives" xml:lang="en"><term>Alanine</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Alanine</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term></keywords><keywords scheme="MESH" qualifier="analogues et dérivés" xml:lang="fr"><term>Alanine</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Microsatellite Repeats</term><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Phytophthora</term><term>Répétitions microsatellites</term></keywords><keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Tabac</term></keywords><keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Tobacco</term></keywords><keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Alanine</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genetics, Population</term><term>Genotype</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Chine</term><term>Génotype</term><term>Génétique des populations</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Tobacco black shank, caused by <i>Phytophthora parasitica</i>, is one of the most notorious tobacco diseases and causes huge economic losses worldwide. Understanding the genetic variation of <i>P. parasitica</i> populations is essential to the development of disease control measures. In this research, 210 simple sequence repeat (SSR) markers for <i>P. parasitica</i> were identified, 10 of which were polymorphic among nine reference strains. We further performed population genetic analysis of 245 <i>P. parasitica</i> isolates randomly collected from tobacco fields in Chongqing for mating type, molecular variation at 14 SSR loci (four of which were identified previously), and sensitivity to the fungicide metalaxyl. The results showed that the A2 mating type was dominant and no A1 mating type isolate was discovered. SSR genotyping distinguished 245 <i>P. parasitica</i> isolates into 46 genotypes, four of which were dominant in the population. Low genotypic diversity and excess heterozygosity were common in nearly all of the populations from Chongqing. Population analysis showed that no differentiation existed among different populations. All isolates tested were highly sensitive to metalaxyl. Taken together, our results showed that the <i>P. parasitica</i> populations from tobacco fields in Chongqing belonged to a clonal lineage and were highly sensitive to metalaxyl.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">31339441</PMID><DateCompleted><Year>2019</Year><Month>10</Month><Day>10</Day></DateCompleted><DateRevised><Year>2019</Year><Month>10</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0191-2917</ISSN><JournalIssue CitedMedium="Print"><Volume>103</Volume><Issue>10</Issue><PubDate><Year>2019</Year><Month>Oct</Month></PubDate></JournalIssue><Title>Plant disease</Title><ISOAbbreviation>Plant Dis</ISOAbbreviation></Journal><ArticleTitle>Population Genetic Analysis of <i>Phytophthora parasitica</i> From Tobacco in Chongqing, Southwestern China.</ArticleTitle><Pagination><MedlinePgn>2599-2605</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1094/PDIS-05-18-0879-RE</ELocationID><Abstract><AbstractText>Tobacco black shank, caused by <i>Phytophthora parasitica</i>, is one of the most notorious tobacco diseases and causes huge economic losses worldwide. Understanding the genetic variation of <i>P. parasitica</i> populations is essential to the development of disease control measures. In this research, 210 simple sequence repeat (SSR) markers for <i>P. parasitica</i> were identified, 10 of which were polymorphic among nine reference strains. We further performed population genetic analysis of 245 <i>P. parasitica</i> isolates randomly collected from tobacco fields in Chongqing for mating type, molecular variation at 14 SSR loci (four of which were identified previously), and sensitivity to the fungicide metalaxyl. The results showed that the A2 mating type was dominant and no A1 mating type isolate was discovered. SSR genotyping distinguished 245 <i>P. parasitica</i> isolates into 46 genotypes, four of which were dominant in the population. Low genotypic diversity and excess heterozygosity were common in nearly all of the populations from Chongqing. Population analysis showed that no differentiation existed among different populations. All isolates tested were highly sensitive to metalaxyl. Taken together, our results showed that the <i>P. parasitica</i> populations from tobacco fields in Chongqing belonged to a clonal lineage and were highly sensitive to metalaxyl.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Qiang</ForeName><Initials>Q</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-1711-0914</Identifier><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Feng</LastName><ForeName>Ruirui</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zheng</LastName><ForeName>Qing</ForeName><Initials>Q</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Jinyang</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Zhirou</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Dan</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Meng</LastName><ForeName>Yuling</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tian</LastName><ForeName>Yuee</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Weiwei</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ma</LastName><ForeName>Xiaowei</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Shuang</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shan</LastName><ForeName>Weixing</ForeName><Initials>W</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-7286-4041</Identifier><AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>07</Month><Day>24</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Dis</MedlineTA><NlmUniqueID>9882809</NlmUniqueID><ISSNLinking>0191-2917</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>16K4M187IF</RegistryNumber><NameOfSubstance UI="C028175">metalaxyl</NameOfSubstance></Chemical><Chemical><RegistryNumber>OF5P57N2ZX</RegistryNumber><NameOfSubstance UI="D000409">Alanine</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000409" MajorTopicYN="N">Alanine</DescriptorName><QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName><QualifierName UI="Q000494" MajorTopicYN="N">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N" Type="Geographic">China</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005828" MajorTopicYN="Y">Genetics, Population</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="Y">Phytophthora</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014026" MajorTopicYN="Y">Tobacco</DescriptorName><QualifierName UI="Q000469" MajorTopicYN="N">parasitology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Phytophthora parasitica</Keyword><Keyword MajorTopicYN="N">metalaxyl sensitivity</Keyword><Keyword MajorTopicYN="N">pathogen diversity</Keyword><Keyword MajorTopicYN="N">simple sequence repeat</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>7</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>10</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>7</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31339441</ArticleId><ArticleId IdType="doi">10.1094/PDIS-05-18-0879-RE</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Zhang, Qiang" sort="Zhang, Qiang" uniqKey="Zhang Q" first="Qiang" last="Zhang">Qiang Zhang</name></noRegion><name sortKey="Feng, Ruirui" sort="Feng, Ruirui" uniqKey="Feng R" first="Ruirui" last="Feng">Ruirui Feng</name><name sortKey="Feng, Ruirui" sort="Feng, Ruirui" uniqKey="Feng R" first="Ruirui" last="Feng">Ruirui Feng</name><name sortKey="Li, Jinyang" sort="Li, Jinyang" uniqKey="Li J" first="Jinyang" last="Li">Jinyang Li</name><name sortKey="Li, Jinyang" sort="Li, Jinyang" uniqKey="Li J" first="Jinyang" last="Li">Jinyang Li</name><name sortKey="Li, Weiwei" sort="Li, Weiwei" uniqKey="Li W" first="Weiwei" last="Li">Weiwei Li</name><name sortKey="Li, Weiwei" sort="Li, Weiwei" uniqKey="Li W" first="Weiwei" last="Li">Weiwei Li</name><name sortKey="Liu, Zhirou" sort="Liu, Zhirou" uniqKey="Liu Z" first="Zhirou" last="Liu">Zhirou Liu</name><name sortKey="Liu, Zhirou" sort="Liu, Zhirou" uniqKey="Liu Z" first="Zhirou" last="Liu">Zhirou Liu</name><name sortKey="Ma, Xiaowei" sort="Ma, Xiaowei" uniqKey="Ma X" first="Xiaowei" last="Ma">Xiaowei Ma</name><name sortKey="Ma, Xiaowei" sort="Ma, Xiaowei" uniqKey="Ma X" first="Xiaowei" last="Ma">Xiaowei Ma</name><name sortKey="Meng, Yuling" sort="Meng, Yuling" uniqKey="Meng Y" first="Yuling" last="Meng">Yuling Meng</name><name sortKey="Meng, Yuling" sort="Meng, Yuling" uniqKey="Meng Y" first="Yuling" last="Meng">Yuling Meng</name><name sortKey="Shan, Weixing" sort="Shan, Weixing" uniqKey="Shan W" first="Weixing" last="Shan">Weixing Shan</name><name sortKey="Shan, Weixing" sort="Shan, Weixing" uniqKey="Shan W" first="Weixing" last="Shan">Weixing Shan</name><name sortKey="Tian, Yuee" sort="Tian, Yuee" uniqKey="Tian Y" first="Yuee" last="Tian">Yuee Tian</name><name sortKey="Tian, Yuee" sort="Tian, Yuee" uniqKey="Tian Y" first="Yuee" last="Tian">Yuee Tian</name><name sortKey="Wang, Shuang" sort="Wang, Shuang" uniqKey="Wang S" first="Shuang" last="Wang">Shuang Wang</name><name sortKey="Wang, Shuang" sort="Wang, Shuang" uniqKey="Wang S" first="Shuang" last="Wang">Shuang Wang</name><name sortKey="Zhang, Qiang" sort="Zhang, Qiang" uniqKey="Zhang Q" first="Qiang" last="Zhang">Qiang Zhang</name><name sortKey="Zhao, Dan" sort="Zhao, Dan" uniqKey="Zhao D" first="Dan" last="Zhao">Dan Zhao</name><name sortKey="Zhao, Dan" sort="Zhao, Dan" uniqKey="Zhao D" first="Dan" last="Zhao">Dan Zhao</name><name sortKey="Zheng, Qing" sort="Zheng, Qing" uniqKey="Zheng Q" first="Qing" last="Zheng">Qing Zheng</name><name sortKey="Zheng, Qing" sort="Zheng, Qing" uniqKey="Zheng Q" first="Qing" last="Zheng">Qing Zheng</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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